J4_8PVL_003
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CAAAUAC*GG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8PVL|1|C1|A|1435, 8PVL|1|C1|U|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PVL_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1044
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PVL|1|C1|C|1434
8PVL|1|C1|A|1435
8PVL|1|C1|A|1436
8PVL|1|C1|A|1437
8PVL|1|C1|U|1438
8PVL|1|C1|A|1439
8PVL|1|C1|C|1440
*
8PVL|1|C1|G|1458
8PVL|1|C1|G|1459
*
8PVL|1|C1|U|1857
8PVL|1|C1|G|1858
8PVL|1|C1|A|1859
8PVL|1|C1|U|1860
*
8PVL|1|C1|A|2315
8PVL|1|C1|G|2316
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LR
- Ribosomal protein L19
- Chain Ld
- Putative 60S ribosomal protein
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