J4_8PVL_007
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- U(OMU)GA*UUUGGCUG(OMG)*UAU*AAAA
- Length
- 20 nucleotides
- Bulged bases
- 8PVL|1|C1|G|2381, 8PVL|1|C1|A|2761
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVL|1|C1|U|2379
8PVL|1|C1|OMU|2380
8PVL|1|C1|G|2381
8PVL|1|C1|A|2382
*
8PVL|1|C1|U|2570
8PVL|1|C1|U|2571
8PVL|1|C1|U|2572
8PVL|1|C1|G|2573
8PVL|1|C1|G|2574
8PVL|1|C1|C|2575
8PVL|1|C1|U|2576
8PVL|1|C1|G|2577
8PVL|1|C1|OMG|2578
*
8PVL|1|C1|U|2716
8PVL|1|C1|A|2717
8PVL|1|C1|U|2718
*
8PVL|1|C1|A|2760
8PVL|1|C1|A|2761
8PVL|1|C1|A|2762
8PVL|1|C1|A|2763
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cg
- Ribosome biogenesis regulatory protein
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
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