J4_8PVL_008

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUAA*UC*GCU*AUGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVL|1|C1|G|2967
8PVL|1|C1|U|2968
8PVL|1|C1|A|2969
8PVL|1|C1|A|2970
*
8PVL|1|C1|U|3000
8PVL|1|C1|C|3001
*
8PVL|1|C1|G|3056
8PVL|1|C1|C|3057
8PVL|1|C1|U|3058
*
8PVL|1|C1|A|3092
8PVL|1|C1|U|3093
8PVL|1|C1|G|3094
8PVL|1|C1|C|3095

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LV

60S ribosomal protein l23-like protein