J4_8Q4F_002

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACGU*ACCAAAGAG*CUUGC

Length

25 nucleotides

Bulged bases

8Q4F|1|A|C|183, 8Q4F|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|A|G|142
8Q4F|1|A|A|143
8Q4F|1|A|G|144
*
8Q4F|1|A|C|178
8Q4F|1|A|A|179
8Q4F|1|A|U|180
8Q4F|1|A|A|181
8Q4F|1|A|A|182
8Q4F|1|A|C|183
8Q4F|1|A|G|184
8Q4F|1|A|U|185
*
8Q4F|1|A|A|192
8Q4F|1|A|C|193
8Q4F|1|A|C|194
8Q4F|1|A|A|195
8Q4F|1|A|A|196
8Q4F|1|A|A|197
8Q4F|1|A|G|198
8Q4F|1|A|A|199
8Q4F|1|A|G|200
*
8Q4F|1|A|C|217
8Q4F|1|A|U|218
8Q4F|1|A|U|219
8Q4F|1|A|G|220
8Q4F|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20