J4_8Q4F_004
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8Q4F|1|Z|U|8, 8Q4F|1|Z|U|47, 8Q4F|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Q4F_004 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1786
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8Q4F|1|Z|G|7
8Q4F|1|Z|U|8
8Q4F|1|Z|G|9
8Q4F|1|Z|G|10
*
8Q4F|1|Z|C|25
8Q4F|1|Z|G|26
8Q4F|1|Z|U|27
*
8Q4F|1|Z|A|43
8Q4F|1|Z|A|44
8Q4F|1|Z|G|45
8Q4F|1|Z|G|46
8Q4F|1|Z|U|47
8Q4F|1|Z|C|48
8Q4F|1|Z|G|49
*
8Q4F|1|Z|C|65
8Q4F|1|Z|C|66
Current chains
- Chain Z
- tRNA-fMet
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: