J4_8Q4F_006

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAGG*CCGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|G|297
8Q4F|1|a|G|298
8Q4F|1|a|A|299
8Q4F|1|a|A|300
8Q4F|1|a|G|301
*
8Q4F|1|a|C|316
8Q4F|1|a|G|317
8Q4F|1|a|C|318
8Q4F|1|a|G|319
*
8Q4F|1|a|C|323
8Q4F|1|a|A|324
8Q4F|1|a|G|325
8Q4F|1|a|G|326
*
8Q4F|1|a|C|336
8Q4F|1|a|C|337
8Q4F|1|a|G|338
8Q4F|1|a|U|339
8Q4F|1|a|A|340
8Q4F|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24