J4_8Q4F_009

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8Q4F|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Q4F_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1318

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|G|1310
8Q4F|1|a|G|1311
8Q4F|1|a|U|1312
8Q4F|1|a|U|1313
8Q4F|1|a|C|1314
*
8Q4F|1|a|G|1338
8Q4F|1|a|G|1339
8Q4F|1|a|U|1340
8Q4F|1|a|G|1341
8Q4F|1|a|A|1342
8Q4F|1|a|G|1343
*
8Q4F|1|a|C|1404
8Q4F|1|a|U|1405
*
8Q4F|1|a|A|1597
8Q4F|1|a|A|1598
8Q4F|1|a|U|1599
8Q4F|1|a|C|1600
8Q4F|1|a|G|1601
8Q4F|1|a|U|1602
8Q4F|1|a|A|1603
8Q4F|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23