J4_8Q5I_008

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

8Q5I|1|1|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q5I|1|1|C|2626
8Q5I|1|1|U|2627
8Q5I|1|1|A|2628
8Q5I|1|1|A|2629
8Q5I|1|1|G|2630
*
8Q5I|1|1|U|2684
8Q5I|1|1|U|2685
8Q5I|1|1|G|2686
*
8Q5I|1|1|C|2713
8Q5I|1|1|C|2714
*
8Q5I|1|1|G|2723
8Q5I|1|1|U|2724
8Q5I|1|1|G|2725

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AP

60S ribosomal protein L42-B

Chain m

60S ribosomal protein L5