J4_8Q5I_011
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8Q5I|1|A|A|357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Q5I_011 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.0531
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Q5I|1|A|C|99
8Q5I|1|A|A|100
8Q5I|1|A|U|101
8Q5I|1|A|U|102
8Q5I|1|A|A|103
8Q5I|1|A|A|104
8Q5I|1|A|A|105
8Q5I|1|A|U|106
8Q5I|1|A|C|107
*
8Q5I|1|A|G|305
8Q5I|1|A|C|306
8Q5I|1|A|C|307
*
8Q5I|1|A|G|355
8Q5I|1|A|U|356
8Q5I|1|A|A|357
8Q5I|1|A|A|358
8Q5I|1|A|C|359
*
8Q5I|1|A|G|381
8Q5I|1|A|G|382
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain J
- 40S ribosomal protein S8
- Chain M
- 40S ribosomal protein S11A
- Chain Y
- Ribosomal protein S23 (S12)
Coloring options: