J4_8QBT_001
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAG*CAA*UGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 8QBT|1|5|U|8, 8QBT|1|5|U|48, 8QBT|1|5|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QBT_001 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.185
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8QBT|1|5|G|7
8QBT|1|5|U|8
8QBT|1|5|A|9
8QBT|1|5|G|10
*
8QBT|1|5|C|26
8QBT|1|5|A|27
8QBT|1|5|A|28
*
8QBT|1|5|U|44
8QBT|1|5|G|45
8QBT|1|5|G|46
8QBT|1|5|G|47
8QBT|1|5|U|48
8QBT|1|5|C|49
8QBT|1|5|G|50
*
8QBT|1|5|U|66
8QBT|1|5|C|67
Current chains
- Chain 5
- Pro-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: