J4_8QBT_004
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QBT_004 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0423
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|A|G|297
8QBT|1|A|G|298
8QBT|1|A|A|299
8QBT|1|A|A|300
8QBT|1|A|G|301
*
8QBT|1|A|C|316
8QBT|1|A|G|317
8QBT|1|A|C|318
8QBT|1|A|G|319
*
8QBT|1|A|C|323
8QBT|1|A|A|324
8QBT|1|A|G|325
*
8QBT|1|A|C|337
8QBT|1|A|G|338
8QBT|1|A|U|339
8QBT|1|A|A|340
8QBT|1|A|C|341
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain U
- Large ribosomal subunit protein uL24
Coloring options: