J4_8QBT_007

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8QBT|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QBT_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0393

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8QBT|1|A|G|1310
8QBT|1|A|G|1311
8QBT|1|A|U|1312
8QBT|1|A|U|1313
8QBT|1|A|C|1314
*
8QBT|1|A|G|1338
8QBT|1|A|G|1339
8QBT|1|A|U|1340
8QBT|1|A|G|1341
8QBT|1|A|A|1342
8QBT|1|A|G|1343
*
8QBT|1|A|C|1404
8QBT|1|A|U|1405
*
8QBT|1|A|A|1597
8QBT|1|A|A|1598
8QBT|1|A|U|1599
8QBT|1|A|C|1600
8QBT|1|A|G|1601
8QBT|1|A|U|1602
8QBT|1|A|A|1603
8QBT|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23

Chain c

Large ribosomal subunit protein bL34