J4_8QBT_015

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAGGG*CGCAUAACG*CCAAAG*UGC

Length

23 nucleotides

Bulged bases

8QBT|1|i|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QBT|1|i|G|142
8QBT|1|i|A|143
8QBT|1|i|G|144
8QBT|1|i|G|145
8QBT|1|i|G|146
*
8QBT|1|i|C|176
8QBT|1|i|G|177
8QBT|1|i|C|178
8QBT|1|i|A|179
8QBT|1|i|U|180
8QBT|1|i|A|181
8QBT|1|i|A|182
8QBT|1|i|C|183
8QBT|1|i|G|184
*
8QBT|1|i|C|193
8QBT|1|i|C|194
8QBT|1|i|A|195
8QBT|1|i|A|196
8QBT|1|i|A|197
8QBT|1|i|G|198
*
8QBT|1|i|U|219
8QBT|1|i|G|220
8QBT|1|i|C|221

Current chains

Chain i

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20