J4_8QBT_016
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8QBT|1|i|C|576, 8QBT|1|i|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QBT_016 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0557
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|i|G|575
8QBT|1|i|C|576
8QBT|1|i|G|577
*
8QBT|1|i|C|764
8QBT|1|i|G|765
8QBT|1|i|A|766
8QBT|1|i|A|767
8QBT|1|i|A|768
8QBT|1|i|G|769
*
8QBT|1|i|C|810
8QBT|1|i|C|811
8QBT|1|i|G|812
8QBT|1|i|U|813
8QBT|1|i|A|814
8QBT|1|i|A|815
8QBT|1|i|A|816
8QBT|1|i|C|817
8QBT|1|i|G|818
8QBT|1|i|A|819
8QBT|1|i|U|820
8QBT|1|i|G|821
*
8QBT|1|i|C|879
8QBT|1|i|C|880
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein bS21
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain p
- Small ribosomal subunit protein uS8
- Chain s
- 30S ribosomal protein S11
- Chain t
- 30S ribosomal protein S12
- Chain w
- Small ribosomal subunit protein uS15
- Chain y
- Small ribosomal subunit protein uS17
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