J4_8QFD_004
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UC*GGUCAG*UC*GGCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8QFD|1|5|C|2429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QFD|1|5|U|2401
8QFD|1|5|C|2402
*
8QFD|1|5|G|2426
8QFD|1|5|G|2427
8QFD|1|5|U|2428
8QFD|1|5|C|2429
8QFD|1|5|A|2430
8QFD|1|5|G|2431
*
8QFD|1|5|U|2530
8QFD|1|5|C|2531
*
8QFD|1|5|G|2769
8QFD|1|5|G|2770
8QFD|1|5|C|2771
8QFD|1|5|C|2772
8QFD|1|5|G|2773
8QFD|1|5|U|2774
8QFD|1|5|A|2775
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19
- Chain X
- 60S ribosomal protein L23a
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
Coloring options: