J4_8QFD_005
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 8QFD|1|5|A|2688
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QFD|1|5|G|2610
8QFD|1|5|G|2611
*
8QFD|1|5|U|2629
8QFD|1|5|G|2630
8QFD|1|5|U|2631
8QFD|1|5|G|2632
8QFD|1|5|A|2633
8QFD|1|5|A|2634
*
8QFD|1|5|U|2684
8QFD|1|5|G|2685
8QFD|1|5|G|2686
8QFD|1|5|A|2687
8QFD|1|5|A|2688
8QFD|1|5|A|2689
8QFD|1|5|G|2690
*
8QFD|1|5|U|2710
8QFD|1|5|C|2711
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain U
- 60S ribosomal protein L22
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
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