J4_8QFD_006
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QFD_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0793
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|G|3634
8QFD|1|5|A|3635
8QFD|1|5|C|3636
8QFD|1|5|U|3637
8QFD|1|5|G|3638
*
8QFD|1|5|C|3650
8QFD|1|5|A|3651
8QFD|1|5|A|3652
8QFD|1|5|A|3653
8QFD|1|5|G|3654
*
8QFD|1|5|U|3690
8QFD|1|5|G|3691
8QFD|1|5|A|3692
8QFD|1|5|U|3693
8QFD|1|5|U|3694
*
8QFD|1|5|A|3821
8QFD|1|5|U|3822
8QFD|1|5|G|3823
8QFD|1|5|A|3824
8QFD|1|5|A|3825
8QFD|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain p
- 60S ribosomal protein L37a
Coloring options: