J4_8QFD_007
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8QFD|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QFD_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1312
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QFD|1|5|C|3696
8QFD|1|5|U|3697
8QFD|1|5|G|3698
*
8QFD|1|5|C|3752
8QFD|1|5|G|3753
*
8QFD|1|5|C|3771
8QFD|1|5|U|3772
8QFD|1|5|U|3773
8QFD|1|5|A|3774
8QFD|1|5|A|3775
8QFD|1|5|G|3776
8QFD|1|5|G|3777
8QFD|1|5|U|3778
8QFD|1|5|A|3779
8QFD|1|5|G|3780
*
8QFD|1|5|U|3814
8QFD|1|5|G|3815
8QFD|1|5|A|3816
8QFD|1|5|A|3817
8QFD|1|5|U|3818
8QFD|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
Coloring options: