J4_8QOA_005
3D structure
- PDB id
- 8QOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SecM-stalled Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- AUAG*CAC*GGGGUCG*UU
- Length
- 16 nucleotides
- Bulged bases
- 8QOA|1|Z|U|8, 8QOA|1|Z|U|47, 8QOA|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QOA_005 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.169
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8QOA|1|Z|A|7
8QOA|1|Z|U|8
8QOA|1|Z|A|9
8QOA|1|Z|G|10
*
8QOA|1|Z|C|25
8QOA|1|Z|A|26
8QOA|1|Z|C|27
*
8QOA|1|Z|G|43
8QOA|1|Z|G|44
8QOA|1|Z|G|45
8QOA|1|Z|G|46
8QOA|1|Z|U|47
8QOA|1|Z|C|48
8QOA|1|Z|G|49
*
8QOA|1|Z|U|65
8QOA|1|Z|U|66
Current chains
- Chain Z
- P-site tRNA-gly
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain Y
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: