J4_8QOI_002

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8QOI|1|L5|A|218, 8QOI|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|196
8QOI|1|L5|A|197
8QOI|1|L5|A|198
8QOI|1|L5|G|199
*
8QOI|1|L5|C|215
8QOI|1|L5|C|216
8QOI|1|L5|C|217
8QOI|1|L5|A|218
8QOI|1|L5|G|219
8QOI|1|L5|C|220
8QOI|1|L5|C|221
8QOI|1|L5|C|222
*
8QOI|1|L5|G|226
8QOI|1|L5|A|227
8QOI|1|L5|C|228
*
8QOI|1|L5|G|240
8QOI|1|L5|G|241
8QOI|1|L5|U|242
8QOI|1|L5|A|243
8QOI|1|L5|G|244

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

60S ribosomal protein L26