J4_8QOI_007

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8QOI|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|2618
8QOI|1|L5|G|2619
*
8QOI|1|L5|U|2637
8QOI|1|L5|G|2638
8QOI|1|L5|U|2639
8QOI|1|L5|G|2640
8QOI|1|L5|A|2641
8QOI|1|L5|A|2642
*
8QOI|1|L5|U|2692
8QOI|1|L5|G|2693
8QOI|1|L5|G|2694
8QOI|1|L5|A|2695
8QOI|1|L5|A|2696
8QOI|1|L5|A|2697
8QOI|1|L5|G|2698
*
8QOI|1|L5|U|2718
8QOI|1|L5|C|2719

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38