J4_8QOI_009

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

8QOI|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QOI_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0866

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|3696
8QOI|1|L5|U|3697
8QOI|1|L5|G|3698
*
8QOI|1|L5|C|3752
8QOI|1|L5|G|3753
*
8QOI|1|L5|C|3771
8QOI|1|L5|U|3772
8QOI|1|L5|U|3773
8QOI|1|L5|A|3774
8QOI|1|L5|A|3775
8QOI|1|L5|G|3776
8QOI|1|L5|G|3777
8QOI|1|L5|U|3778
8QOI|1|L5|A|3779
8QOI|1|L5|G|3780
*
8QOI|1|L5|U|3814
8QOI|1|L5|G|3815
8QOI|1|L5|A|3816
8QOI|1|L5|A|3817
8QOI|1|L5|UY1|3818
8QOI|1|L5|G|3819

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA