J4_8QPP_006
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAG*CGCC*GGA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QPP_006 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.1154
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QPP|1|X|U|340
8QPP|1|X|G|341
8QPP|1|X|A|342
8QPP|1|X|A|343
8QPP|1|X|G|344
*
8QPP|1|X|C|360
8QPP|1|X|G|361
8QPP|1|X|C|362
8QPP|1|X|C|363
*
8QPP|1|X|G|367
8QPP|1|X|G|368
8QPP|1|X|A|369
*
8QPP|1|X|U|381
8QPP|1|X|G|382
8QPP|1|X|U|383
8QPP|1|X|A|384
8QPP|1|X|G|385
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain b
- Large ribosomal subunit protein uL4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: