J4_8QPP_013

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8QPP|1|X|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QPP_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1092

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8QPP|1|X|C|1862
8QPP|1|X|U|1863
8QPP|1|X|G|1864
*
8QPP|1|X|C|1934
8QPP|1|X|G|1935
*
8QPP|1|X|C|1953
8QPP|1|X|C|1954
8QPP|1|X|U|1955
8QPP|1|X|A|1956
8QPP|1|X|A|1957
8QPP|1|X|G|1958
8QPP|1|X|G|1959
8QPP|1|X|U|1960
8QPP|1|X|A|1961
8QPP|1|X|G|1962
*
8QPP|1|X|C|1996
8QPP|1|X|G|1997
8QPP|1|X|A|1998
8QPP|1|X|A|1999
8QPP|1|X|A|2000
8QPP|1|X|G|2001

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain U

Transfer RNA; tRNA

Chain Z

Large ribosomal subunit protein uL2