J4_8QRN_002
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CAAG*CGUUCCAG*CAC*GAAACAG
- Length
- 22 nucleotides
- Bulged bases
- 8QRN|1|A|A|700, 8QRN|1|A|U|711, 8QRN|1|A|C|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRN|1|A|C|698
8QRN|1|A|A|699
8QRN|1|A|A|700
8QRN|1|A|G|701
*
8QRN|1|A|C|708
8QRN|1|A|G|709
8QRN|1|A|U|710
8QRN|1|A|U|711
8QRN|1|A|C|712
8QRN|1|A|C|713
8QRN|1|A|A|714
8QRN|1|A|G|715
*
8QRN|1|A|C|800
8QRN|1|A|A|801
8QRN|1|A|C|802
*
8QRN|1|A|G|811
8QRN|1|A|A|812
8QRN|1|A|A|813
8QRN|1|A|A|814
8QRN|1|A|C|815
8QRN|1|A|A|816
8QRN|1|A|G|817
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 0
- 28S ribosomal protein S34, mitochondrial
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain M
- 28S ribosomal protein S16, mitochondrial
- Chain U
- 28S ribosomal protein S26, mitochondrial
Coloring options: