J4_8QRN_003
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GAGUUCAC*GACA*UAG*CC
- Length
- 17 nucleotides
- Bulged bases
- 8QRN|1|A|C|722
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRN|1|A|G|717
8QRN|1|A|A|718
8QRN|1|A|G|719
8QRN|1|A|U|720
8QRN|1|A|U|721
8QRN|1|A|C|722
8QRN|1|A|A|723
8QRN|1|A|C|724
*
8QRN|1|A|G|750
8QRN|1|A|A|751
8QRN|1|A|C|752
8QRN|1|A|A|753
*
8QRN|1|A|U|789
8QRN|1|A|A|790
8QRN|1|A|G|791
*
8QRN|1|A|C|797
8QRN|1|A|C|798
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 0
- 28S ribosomal protein S34, mitochondrial
- Chain M
- 28S ribosomal protein S16, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: