J4_8R6C_009

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8R6C|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R6C_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0446

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8R6C|1|a|G|1310
8R6C|1|a|G|1311
8R6C|1|a|U|1312
8R6C|1|a|U|1313
8R6C|1|a|C|1314
*
8R6C|1|a|G|1338
8R6C|1|a|G|1339
8R6C|1|a|U|1340
8R6C|1|a|G|1341
8R6C|1|a|A|1342
8R6C|1|a|G|1343
*
8R6C|1|a|C|1404
8R6C|1|a|U|1405
*
8R6C|1|a|A|1597
8R6C|1|a|A|1598
8R6C|1|a|U|1599
8R6C|1|a|C|1600
8R6C|1|a|G|1601
8R6C|1|a|U|1602
8R6C|1|a|A|1603
8R6C|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23