J4_8RCL_002

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0793

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8RCL|1|72|G|297
8RCL|1|72|G|298
8RCL|1|72|A|299
8RCL|1|72|A|300
8RCL|1|72|G|301
*
8RCL|1|72|C|316
8RCL|1|72|G|317
8RCL|1|72|C|318
8RCL|1|72|G|319
*
8RCL|1|72|C|323
8RCL|1|72|A|324
8RCL|1|72|G|325
*
8RCL|1|72|C|337
8RCL|1|72|G|338
8RCL|1|72|U|339
8RCL|1|72|A|340
8RCL|1|72|C|341

Current chains

Chain 72

23S ribosomal RNA

Nearby chains