J4_8RCL_003

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2175

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8RCL|1|72|C|601
8RCL|1|72|A|602
8RCL|1|72|A|603
8RCL|1|72|G|604
*
8RCL|1|72|C|624
8RCL|1|72|G|625
8RCL|1|72|A|626
8RCL|1|72|A|627
8RCL|1|72|G|628
*
8RCL|1|72|C|635
8RCL|1|72|G|636
8RCL|1|72|A|637
8RCL|1|72|G|638
*
8RCL|1|72|C|650
8RCL|1|72|G|651
8RCL|1|72|U|652
8RCL|1|72|U|653
8RCL|1|72|A|654
8RCL|1|72|A|655
8RCL|1|72|G|656

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35