J4_8RCL_005

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RCL|1|72|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0678

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCL|1|72|G|1310
8RCL|1|72|G|1311
8RCL|1|72|U|1312
8RCL|1|72|U|1313
8RCL|1|72|C|1314
*
8RCL|1|72|G|1338
8RCL|1|72|G|1339
8RCL|1|72|U|1340
8RCL|1|72|G|1341
8RCL|1|72|A|1342
8RCL|1|72|G|1343
*
8RCL|1|72|C|1404
8RCL|1|72|U|1405
*
8RCL|1|72|A|1597
8RCL|1|72|A|1598
8RCL|1|72|U|1599
8RCL|1|72|C|1600
8RCL|1|72|G|1601
8RCL|1|72|U|1602
8RCL|1|72|A|1603
8RCL|1|72|C|1604

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34