J4_8RCL_020

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AUAG*CGC*GAG(G7M)UCA*UU

Length

16 nucleotides

Bulged bases

8RCL|1|Y2|U|8, 8RCL|1|Y2|U|47, 8RCL|1|Y2|C|48

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_020 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.2269

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8RCL|1|Y2|A|7
8RCL|1|Y2|U|8
8RCL|1|Y2|A|9
8RCL|1|Y2|G|10
*
8RCL|1|Y2|C|25
8RCL|1|Y2|G|26
8RCL|1|Y2|C|27
*
8RCL|1|Y2|G|43
8RCL|1|Y2|A|44
8RCL|1|Y2|G|45
8RCL|1|Y2|G7M|46
8RCL|1|Y2|U|47
8RCL|1|Y2|C|48
8RCL|1|Y2|A|49
*
8RCL|1|Y2|U|65
8RCL|1|Y2|U|66

Current chains

Chain Y2

tRNA-Ala (A-site)

Nearby chains

Chain 72

Large subunit ribosomal RNA; LSU rRNA