J4_8RCM_003

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCM_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2105

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8RCM|1|72|C|601
8RCM|1|72|A|602
8RCM|1|72|A|603
8RCM|1|72|G|604
*
8RCM|1|72|C|624
8RCM|1|72|G|625
8RCM|1|72|A|626
8RCM|1|72|A|627
8RCM|1|72|G|628
*
8RCM|1|72|C|635
8RCM|1|72|G|636
8RCM|1|72|A|637
8RCM|1|72|G|638
*
8RCM|1|72|C|650
8RCM|1|72|G|651
8RCM|1|72|U|652
8RCM|1|72|U|653
8RCM|1|72|A|654
8RCM|1|72|A|655
8RCM|1|72|G|656

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35