J4_8RCM_005

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RCM|1|72|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCM_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0774

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCM|1|72|G|1310
8RCM|1|72|G|1311
8RCM|1|72|U|1312
8RCM|1|72|U|1313
8RCM|1|72|C|1314
*
8RCM|1|72|G|1338
8RCM|1|72|G|1339
8RCM|1|72|U|1340
8RCM|1|72|G|1341
8RCM|1|72|A|1342
8RCM|1|72|G|1343
*
8RCM|1|72|C|1404
8RCM|1|72|U|1405
*
8RCM|1|72|A|1597
8RCM|1|72|A|1598
8RCM|1|72|U|1599
8RCM|1|72|C|1600
8RCM|1|72|G|1601
8RCM|1|72|U|1602
8RCM|1|72|A|1603
8RCM|1|72|C|1604

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34