J4_8RCM_014
3D structure
- PDB id
- 8RCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8RCM|1|A1|C|576, 8RCM|1|A1|A|815, 8RCM|1|A1|C|817, 8RCM|1|A1|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RCM_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0837
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RCM|1|A1|G|575
8RCM|1|A1|C|576
8RCM|1|A1|G|577
*
8RCM|1|A1|C|764
8RCM|1|A1|G|765
8RCM|1|A1|A|766
8RCM|1|A1|A|767
8RCM|1|A1|A|768
8RCM|1|A1|G|769
*
8RCM|1|A1|C|810
8RCM|1|A1|C|811
8RCM|1|A1|G|812
8RCM|1|A1|U|813
8RCM|1|A1|A|814
8RCM|1|A1|A|815
8RCM|1|A1|A|816
8RCM|1|A1|C|817
8RCM|1|A1|G|818
8RCM|1|A1|A|819
8RCM|1|A1|U|820
8RCM|1|A1|G|821
*
8RCM|1|A1|C|879
8RCM|1|A1|C|880
Current chains
- Chain A1
- 16S ribosomal RNA
Nearby chains
- Chain H1
- Small ribosomal subunit protein uS8
- Chain K1
- Small ribosomal subunit protein uS11
- Chain L1
- Small ribosomal subunit protein uS12
- Chain O1
- 30S ribosomal protein S15
- Chain Q1
- Small ribosomal subunit protein uS17
- Chain U1
- 30S ribosomal protein S21
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