J4_8RCS_002

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCS_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.087

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8RCS|1|72|G|297
8RCS|1|72|G|298
8RCS|1|72|A|299
8RCS|1|72|A|300
8RCS|1|72|G|301
*
8RCS|1|72|C|316
8RCS|1|72|G|317
8RCS|1|72|C|318
8RCS|1|72|G|319
*
8RCS|1|72|C|323
8RCS|1|72|A|324
8RCS|1|72|G|325
*
8RCS|1|72|C|337
8RCS|1|72|G|338
8RCS|1|72|U|339
8RCS|1|72|A|340
8RCS|1|72|C|341

Current chains

Chain 72

23S ribosomal RNA

Nearby chains