J4_8RCS_009

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RCS|1|72|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCS_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1757

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RCS|1|72|C|1833
8RCS|1|72|U|1834
8RCS|1|72|2MG|1835
*
8RCS|1|72|C|1905
8RCS|1|72|G|1906
*
8RCS|1|72|C|1924
8RCS|1|72|C|1925
8RCS|1|72|U|1926
8RCS|1|72|A|1927
8RCS|1|72|A|1928
8RCS|1|72|G|1929
8RCS|1|72|G|1930
8RCS|1|72|U|1931
8RCS|1|72|A|1932
8RCS|1|72|G|1933
*
8RCS|1|72|C|1967
8RCS|1|72|G|1968
8RCS|1|72|A|1969
8RCS|1|72|A|1970
8RCS|1|72|U|1971
8RCS|1|72|G|1972

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2