J4_8RCT_003

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2074

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8RCT|1|72|C|601
8RCT|1|72|A|602
8RCT|1|72|A|603
8RCT|1|72|G|604
*
8RCT|1|72|C|624
8RCT|1|72|G|625
8RCT|1|72|A|626
8RCT|1|72|A|627
8RCT|1|72|G|628
*
8RCT|1|72|C|635
8RCT|1|72|G|636
8RCT|1|72|A|637
8RCT|1|72|G|638
*
8RCT|1|72|C|650
8RCT|1|72|G|651
8RCT|1|72|U|652
8RCT|1|72|U|653
8RCT|1|72|A|654
8RCT|1|72|A|655
8RCT|1|72|G|656

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35