J4_8RCT_009

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RCT|1|72|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1753

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RCT|1|72|C|1833
8RCT|1|72|U|1834
8RCT|1|72|2MG|1835
*
8RCT|1|72|C|1905
8RCT|1|72|G|1906
*
8RCT|1|72|C|1924
8RCT|1|72|C|1925
8RCT|1|72|U|1926
8RCT|1|72|A|1927
8RCT|1|72|A|1928
8RCT|1|72|G|1929
8RCT|1|72|G|1930
8RCT|1|72|U|1931
8RCT|1|72|A|1932
8RCT|1|72|G|1933
*
8RCT|1|72|C|1967
8RCT|1|72|G|1968
8RCT|1|72|A|1969
8RCT|1|72|A|1970
8RCT|1|72|U|1971
8RCT|1|72|G|1972

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2