J4_8RCT_018

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

G(4SU)AG*CAC*GGU(G7M)UUG*CC

Length

16 nucleotides

Bulged bases

8RCT|1|W|4SU|8, 8RCT|1|W|U|47, 8RCT|1|W|U|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_018 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.3082

The information below is about J4_6UGG_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8RCT|1|W|G|7
8RCT|1|W|4SU|8
8RCT|1|W|A|9
8RCT|1|W|G|10
*
8RCT|1|W|C|25
8RCT|1|W|A|26
8RCT|1|W|C|27
*
8RCT|1|W|G|43
8RCT|1|W|G|44
8RCT|1|W|U|45
8RCT|1|W|G7M|46
8RCT|1|W|U|47
8RCT|1|W|U|48
8RCT|1|W|G|49
*
8RCT|1|W|C|65
8RCT|1|W|C|66

Current chains

Chain W

tRNA-Trp (P/E-site)

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain M2

Small ribosomal subunit protein uS13

Chain g2

50S ribosomal protein L33