J4_8RCT_019
3D structure
- PDB id
- 8RCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Rotated disome interface class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.32 Å
Loop
- Sequence
- AUAG*CGC*GAG(G7M)UCA*UU
- Length
- 16 nucleotides
- Bulged bases
- 8RCT|1|Y|U|8, 8RCT|1|Y|U|47, 8RCT|1|Y|C|48
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RCT_019 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.2349
- The information below is about J4_6UFM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8RCT|1|Y|A|7
8RCT|1|Y|U|8
8RCT|1|Y|A|9
8RCT|1|Y|G|10
*
8RCT|1|Y|C|25
8RCT|1|Y|G|26
8RCT|1|Y|C|27
*
8RCT|1|Y|G|43
8RCT|1|Y|A|44
8RCT|1|Y|G|45
8RCT|1|Y|G7M|46
8RCT|1|Y|U|47
8RCT|1|Y|C|48
8RCT|1|Y|A|49
*
8RCT|1|Y|U|65
8RCT|1|Y|U|66
Current chains
- Chain Y
- tRNA-Ala (A/P-site)
Nearby chains
- Chain 72
- Large subunit ribosomal RNA; LSU rRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain h2
- 50S ribosomal protein L16
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