J4_8RD8_001
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CG*CAUAUUAAGUAG*UGAAGAUG*CAAG
- Length
- 26 nucleotides
- Bulged bases
- 8RD8|1|Z2|U|352, 8RD8|1|Z2|U|388
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RD8|1|Z2|C|265
8RD8|1|Z2|G|266
*
8RD8|1|Z2|C|347
8RD8|1|Z2|A|348
8RD8|1|Z2|U|349
8RD8|1|Z2|A|350
8RD8|1|Z2|U|351
8RD8|1|Z2|U|352
8RD8|1|Z2|A|353
8RD8|1|Z2|A|354
8RD8|1|Z2|G|355
8RD8|1|Z2|U|356
8RD8|1|Z2|A|357
8RD8|1|Z2|G|358
*
8RD8|1|Z2|U|382
8RD8|1|Z2|G|383
8RD8|1|Z2|A|384
8RD8|1|Z2|A|385
8RD8|1|Z2|G|386
8RD8|1|Z2|A|387
8RD8|1|Z2|U|388
8RD8|1|Z2|G|389
*
8RD8|1|Z2|C|404
8RD8|1|Z2|A|405
8RD8|1|Z2|A|406
8RD8|1|Z2|G|407
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain C1
- Large ribosomal subunit protein bL9
- Chain WD
- Large ribosomal subunit protein bL28
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