J4_8RD8_004

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RD8|1|Z2|G|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RD8_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0626

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RD8|1|Z2|G|1294
8RD8|1|Z2|G|1295
8RD8|1|Z2|U|1296
8RD8|1|Z2|U|1297
8RD8|1|Z2|C|1298
*
8RD8|1|Z2|G|1322
8RD8|1|Z2|G|1323
8RD8|1|Z2|U|1324
8RD8|1|Z2|G|1325
8RD8|1|Z2|A|1326
8RD8|1|Z2|G|1327
*
8RD8|1|Z2|C|1388
8RD8|1|Z2|U|1389
*
8RD8|1|Z2|A|1585
8RD8|1|Z2|A|1586
8RD8|1|Z2|U|1587
8RD8|1|Z2|C|1588
8RD8|1|Z2|G|1589
8RD8|1|Z2|U|1590
8RD8|1|Z2|A|1591
8RD8|1|Z2|C|1592

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Sn

Large ribosomal subunit protein uL23