J4_8RD8_011

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAGUAAUAC*GUC*GUAG*CC

Length

18 nucleotides

Bulged bases

8RD8|1|iN|U|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RD8|1|iN|G|160
8RD8|1|iN|A|161
8RD8|1|iN|G|162
8RD8|1|iN|U|163
8RD8|1|iN|A|164
8RD8|1|iN|A|165
8RD8|1|iN|U|166
8RD8|1|iN|A|167
8RD8|1|iN|C|168
*
8RD8|1|iN|G|281
8RD8|1|iN|U|282
8RD8|1|iN|C|283
*
8RD8|1|iN|G|329
8RD8|1|iN|U|330
8RD8|1|iN|A|331
8RD8|1|iN|G|332
*
8RD8|1|iN|C|354
8RD8|1|iN|C|355

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain QZ

Small ribosomal subunit protein uS17