J4_8RDW_003
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CAAG*CGUAG*CGAG*CGUCUAG
- Length
- 20 nucleotides
- Bulged bases
- 8RDW|1|Z2|U|639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDW_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4573
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RDW|1|Z2|C|586
8RDW|1|Z2|A|587
8RDW|1|Z2|A|588
8RDW|1|Z2|G|589
*
8RDW|1|Z2|C|609
8RDW|1|Z2|G|610
8RDW|1|Z2|U|611
8RDW|1|Z2|A|612
8RDW|1|Z2|G|613
*
8RDW|1|Z2|C|620
8RDW|1|Z2|G|621
8RDW|1|Z2|A|622
8RDW|1|Z2|G|623
*
8RDW|1|Z2|C|635
8RDW|1|Z2|G|636
8RDW|1|Z2|U|637
8RDW|1|Z2|C|638
8RDW|1|Z2|U|639
8RDW|1|Z2|A|640
8RDW|1|Z2|G|641
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain dh
- Large ribosomal subunit protein bL35
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