J4_8RDW_005

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RDW|1|Z2|G|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDW_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.061

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|G|1294
8RDW|1|Z2|G|1295
8RDW|1|Z2|U|1296
8RDW|1|Z2|U|1297
8RDW|1|Z2|C|1298
*
8RDW|1|Z2|G|1322
8RDW|1|Z2|G|1323
8RDW|1|Z2|U|1324
8RDW|1|Z2|G|1325
8RDW|1|Z2|A|1326
8RDW|1|Z2|G|1327
*
8RDW|1|Z2|C|1388
8RDW|1|Z2|U|1389
*
8RDW|1|Z2|A|1585
8RDW|1|Z2|A|1586
8RDW|1|Z2|U|1587
8RDW|1|Z2|C|1588
8RDW|1|Z2|G|1589
8RDW|1|Z2|U|1590
8RDW|1|Z2|A|1591
8RDW|1|Z2|C|1592

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Sn

Large ribosomal subunit protein uL23