J4_8RDW_009

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RDW|1|Z2|U|1957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDW_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1304

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8RDW|1|Z2|C|1819
8RDW|1|Z2|U|1820
8RDW|1|Z2|G|1821
*
8RDW|1|Z2|C|1891
8RDW|1|Z2|G|1892
*
8RDW|1|Z2|C|1910
8RDW|1|Z2|C|1911
8RDW|1|Z2|U|1912
8RDW|1|Z2|A|1913
8RDW|1|Z2|A|1914
8RDW|1|Z2|G|1915
8RDW|1|Z2|G|1916
8RDW|1|Z2|U|1917
8RDW|1|Z2|A|1918
8RDW|1|Z2|G|1919
*
8RDW|1|Z2|C|1953
8RDW|1|Z2|G|1954
8RDW|1|Z2|A|1955
8RDW|1|Z2|A|1956
8RDW|1|Z2|U|1957
8RDW|1|Z2|G|1958

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2

Chain iN

Small subunit ribosomal RNA; SSU rRNA