J4_8RDW_012

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAGUAAUAC*GUC*GUAG*CC

Length

18 nucleotides

Bulged bases

8RDW|1|iN|U|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDW|1|iN|G|160
8RDW|1|iN|A|161
8RDW|1|iN|G|162
8RDW|1|iN|U|163
8RDW|1|iN|A|164
8RDW|1|iN|A|165
8RDW|1|iN|U|166
8RDW|1|iN|A|167
8RDW|1|iN|C|168
*
8RDW|1|iN|G|281
8RDW|1|iN|U|282
8RDW|1|iN|C|283
*
8RDW|1|iN|G|329
8RDW|1|iN|U|330
8RDW|1|iN|A|331
8RDW|1|iN|G|332
*
8RDW|1|iN|C|354
8RDW|1|iN|C|355

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain QZ

Small ribosomal subunit protein uS17