J4_8RJB_003

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG

Length

30 nucleotides

Bulged bases

8RJB|1|K|G|959, 8RJB|1|K|C|972, 8RJB|1|K|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|712
8RJB|1|K|C|713
*
8RJB|1|K|G|955
8RJB|1|K|A|956
8RJB|1|K|G|957
8RJB|1|K|G|958
8RJB|1|K|G|959
8RJB|1|K|A|960
8RJB|1|K|G|961
*
8RJB|1|K|U|971
8RJB|1|K|G|971|||A
8RJB|1|K|C|972
8RJB|1|K|G|973
8RJB|1|K|C|974
8RJB|1|K|C|975
8RJB|1|K|G|976
8RJB|1|K|C|977
8RJB|1|K|G|978
8RJB|1|K|C|979
8RJB|1|K|U|980
*
8RJB|1|K|G|1275
8RJB|1|K|C|1276
8RJB|1|K|G|1277
8RJB|1|K|C|1278
8RJB|1|K|A|1279
8RJB|1|K|C|1280
8RJB|1|K|G|1281
8RJB|1|K|G|1282
8RJB|1|K|G|1283
8RJB|1|K|G|1284

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain e

Ribosomal protein L32