J4_8RJB_006

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8RJB|1|K|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|G|2618
8RJB|1|K|G|2619
*
8RJB|1|K|U|2637
8RJB|1|K|G|2638
8RJB|1|K|U|2639
8RJB|1|K|G|2640
8RJB|1|K|A|2641
8RJB|1|K|A|2642
*
8RJB|1|K|U|2692
8RJB|1|K|G|2693
8RJB|1|K|G|2694
8RJB|1|K|A|2695
8RJB|1|K|A|2696
8RJB|1|K|A|2697
8RJB|1|K|G|2698
*
8RJB|1|K|U|2718
8RJB|1|K|C|2719

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Ribosomal protein L22

Chain g

60S ribosomal protein L34

Chain k

60S ribosomal protein L38