J4_8RJB_008

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8RJB|1|K|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RJB_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.0999

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|3696
8RJB|1|K|U|3697
8RJB|1|K|G|3698
*
8RJB|1|K|C|3752
8RJB|1|K|G|3753
*
8RJB|1|K|C|3771
8RJB|1|K|U|3772
8RJB|1|K|U|3773
8RJB|1|K|A|3774
8RJB|1|K|A|3775
8RJB|1|K|G|3776
8RJB|1|K|G|3777
8RJB|1|K|U|3778
8RJB|1|K|A|3779
8RJB|1|K|G|3780
*
8RJB|1|K|U|3814
8RJB|1|K|G|3815
8RJB|1|K|A|3816
8RJB|1|K|A|3817
8RJB|1|K|U|3818
8RJB|1|K|G|3819

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain n

60S ribosomal protein L41

Chain q

Transfer RNA; tRNA